Welcome to pygenbank’s documentation!

Description

This Python module provides some light wrapper functions around Biopython tools to provide a simplified interface to NCBI’s GenBank server. Those functions are accessible from the genbank module, and in addition a few scripts accessible from the command lines are provided.

Contents

• Installation
  • Easy install with pip
  • Installation from a cloned repository
• genbank module
  • Description
  • Tutorial
  • Functions
• Command-line scripts
  • pygenbank-search
  • pygenbank-extract-CDS
  • How to profile command-line script execution

Indices and tables

• Index
• Module Index
• Search Page